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The California Current Ecosystem (CCE) is a natural laboratory for studying the chemical and ecological impacts of ocean acidification. Biogeochemical variability in the region is due primarily to wind‐driven near‐shore upwelling of cold waters that are rich in re‐mineralized carbon and poor in oxygen. The coastal regions are exposed to surface waters with increasing concentrations of anthropogenic CO₂(C_anth) from exchanges with the atmosphere and the shoreward transport and mixing of upwelled water. The upwelling drives intense cycling of organic matter that is created through photosynthesis in the surface ocean and degraded through biological respiration in subsurface habitats. We used an extended multiple linear‐regression approach to determine the spatial and temporal concentrations of C_anthand respired carbon (C_bio) in the CCE based on cruise data from 2007, 2011, 2012, 2013, 2016, and 2021. Over the region, the C_anthaccumulation rate increased from 0.8 ± 0.1 μmol kg⁻¹ yr⁻¹in the northern latitudes to 1.1 ± 0.1 μmol kg⁻¹ yr⁻¹further south. The rates decreased to values of about ∼0.3 μmol kg⁻¹ yr⁻¹at depths near 300 m. These accumulation rates at the surface correspond to total pH decreases that averaged about 0.002 yr^‐1; whereas, decreases in aragonite saturation state ranged from 0.006 to 0.011 yr^‐1. The impact of the C_anthuptake was to decrease the amount of oxygen consumption required to cross critical biological thresholds (i.e., calcification, dissolution) for marine calcifiers and are significantly lower in the recent cruises than in the pre‐industrial period because of the addition of C_anth.

 

The ocean carbonate system is critical to monitor because it plays a major role in regulating Earth's climate and marine ecosystems. It is monitored using a variety of measurements, and it is commonly understood that all components of seawater carbonate chemistry can be calculated when at least two carbonate system variables are measured. However, several recent studies have highlighted systematic discrepancies between calculated and directly measured carbonate chemistry variables and these discrepancies have large implications for efforts to measure and quantify the changing ocean carbon cycle. Given this, the Ocean Carbonate System Intercomparison Forum (OCSIF) was formed as a working group through the Ocean Carbon and Biogeochemistry program to coordinate and recommend research to quantify and/or reduce uncertainties and disagreements in measurable seawater carbonate system measurements and calculations, identify unknown or overlooked sources of these uncertainties, and provide recommendations for making progress on community efforts despite these uncertainties. With this paper we aim to (1) summarize recent progress toward quantifying and reducing carbonate system uncertainties; (2) advocate for research to further reduce and better quantify carbonate system measurement uncertainties; (3) present a small amount of new data, metadata, and analysis related to uncertainties in carbonate system measurements; and (4) restate and explain the rationales behind several OCSIF recommendations. We focus on open ocean carbonate chemistry, and caution that the considerations we discuss become further complicated in coastal, estuarine, and sedimentary environments.

 

Detailed descriptions of microbial communities have lagged far behind physical and chemical measurements in the marine environment. Here, we present 971 globally distributed surface ocean metagenomes collected at high spatio-temporal resolution. Our low-cost metagenomic sequencing protocol produced 3.65 terabases of data, where the median number of base pairs per sample was 3.41 billion. The median distance between sampling stations was 26 km. The metagenomic libraries described here were collected as a part of a biological initiative for the Global Ocean Ship-based Hydrographic Investigations Program, or “Bio-GO-SHIP.” One of the primary aims of GO-SHIP is to produce high spatial and vertical resolution measurements of key state variables to directly quantify climate change impacts on ocean environments. By similarly collecting marine metagenomes at high spatiotemporal resolution, we expect that this dataset will help answer questions about the link between microbial communities and biogeochemical fluxes in a changing ocean.

 

Effective data management plays a key role in oceanographic research as cruise-based data, collected from different laboratories and expeditions, are commonly compiled to investigate regional to global oceanographic processes. Here we describe new and updated best practice data standards for discrete chemical oceanographic observations, specifically those dealing with column header abbreviations, quality control flags, missing value indicators, and standardized calculation of certain properties. These data standards have been developed with the goals of improving the current practices of the scientific community and promoting their international usage. These guidelines are intended to standardize data files for data sharing and submission into permanent archives. They will facilitate future quality control and synthesis efforts and lead to better data interpretation. In turn, this will promote research in ocean biogeochemistry, such as studies of carbon cycling and ocean acidification, on regional to global scales. These best practice standards are not mandatory. Agencies, institutes, universities, or research vessels can continue using different data standards if it is important for them to maintain historical consistency. However, it is hoped that they will be adopted as widely as possible to facilitate consistency and to achieve the goals stated above.